Package: eemR 1.0.2.9000

eemR: Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data

Provides various tools for preprocessing Emission-Excitation-Matrix (EEM) for Parallel Factor Analysis (PARAFAC). Different methods are also provided to calculate common metrics such as humification index and fluorescence index.

Authors:Philippe Massicotte [aut, cre]

eemR_1.0.2.9000.tar.gz
eemR_1.0.2.9000.zip(r-4.7)eemR_1.0.2.9000.zip(r-4.6)eemR_1.0.2.9000.zip(r-4.5)
eemR_1.0.2.9000.tgz(r-4.6-any)eemR_1.0.2.9000.tgz(r-4.5-any)
eemR_1.0.2.9000.tar.gz(r-4.7-any)eemR_1.0.2.9000.tar.gz(r-4.6-any)
eemR_1.0.2.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
eemR/json (API)

# Install 'eemR' in R:
install.packages('eemR', repos = c('https://pmassicotte.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pmassicotte/eemr/issues

Pkgdown/docs site:https://pmassicotte.github.io

Datasets:

On CRAN:

Conda:

dissolved-organic-matteremissionexcitationfluorescenceopticsquarto

7.53 score 21 stars 1 packages 67 scripts 472 downloads 2 mentions 17 exports 41 dependencies

Last updated from:ea5b55044f. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK169
source / vignettesOK228
linux-release-x86_64OK182
macos-release-arm64OK156
macos-oldrel-arm64OK150
windows-develOK149
windows-releaseOK140
windows-oldrelOK148
wasm-releaseOK137

Exports:eem_bindeem_biological_indexeem_coble_peakseem_cuteem_export_matlabeem_extracteem_fluorescence_indexeem_humification_indexeem_inner_filter_effecteem_nameseem_names<-eem_peakseem_raman_normalisationeem_readeem_remove_blankeem_remove_scatteringeem_set_wavelengths

Dependencies:assertthatclicpp11data.tabledplyrfarvergenericsggplot2gluegridExtragtableisobandjsonlitelabelinglifecyclemagrittrpillarpkgconfigpracmapurrrR.matlabR.methodsS3R.ooR.utilsR6RColorBrewerrlangrlistS7scalesstringistringrtibbletidyselectutf8vctrsviridisviridisLitewithrXMLyaml

Introduction to eemR
Introduction | Fluorescence of DOM: theoretical and mathematical background | Scattering correction | Inner-filter effect correction | Raman calibration | Metrics | Coble's peaks | Fluorescence, humification and biological indices | R code and study case | Data importation and plotting | Blank subtraction | Raman and Rayleigh scattering removal | Raman normalization | Exporting to MATLAB | Metric extraction | Using R pipeline | Conclusion | References
Rendered fromintroduction.qmdusingquarto::html

Last update: 2025-12-04
Started: 2025-03-24

Creating custom import functions
Introduction | Example: Importing Cary Eclipse Spectrofluorometer Data | Function Requirements | Writing the Import Function | Testing the Import Function | Visualizing the EEM Data | Using Other Functions in eemR
Rendered fromcustom-import-function.qmdusingquarto::html

Last update: 2025-03-25
Started: 2025-03-24